#!/bin/csh

set ortho = ortho3
set outDir = /cluster/data/encode/${ortho}/consensus
set fromDb = hg17
mkdir -p $outDir
rm -f log
touch log
foreach db ( canFam1 danRer2 galGal2 mm5 panTro1 rn3 tetNig1 monDom1 )
	echo "========== " ${db} " ============ " `date`  >> log
	regionOrtho \
	    ${fromDb}.encodeRegions \
	    ${db}.encodeRegionsLiftOver \
	    ${db}.encodeRegionsMercator \
	    $outDir/${db}.bed \
	    ${db}.err >>& log
	hgLoadBed \
	    ${db} \
	    encodeRegionConsensus \
	    $outDir/${db}.bed >>& log
end
echo "===============================" `date`  >> log
rm -f bed.tab
