# 'C++' Implementations of Functional Enrichment Analysis

## Documentation for package ‘enrichit’ version 0.1.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

compareClusterResult-class | Class "compareClusterResult" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis.
enrichit_params | Common parameters for enrichit functions
enrichResult-class | Class "enrichResult" This class represents the result of enrichment analysis.
EXTID2NAME | EXTID2NAME
geneID | geneID generic
geneInCategory | geneInCategory generic
gsea | Gene Set Enrichment Analysis (GSEA)
gseahResult-class | Class "gseaResult" This class represents the result of GSEA analysis
gseaResult-class | Class "gseaResult" This class represents the result of GSEA analysis
gseaScores | Calculate GSEA Running Enrichment Scores
gsea_gson | gsea_gson
gsfilter | gsfilter
ora | Over-Representation Analysis (ORA)
ora_gson | ora-gson
plot-method | Class "compareClusterResult" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis.
setReadable | setReadable
show | show method
show-method | Class "compareClusterResult" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis.
show-method | Class "enrichResult" This class represents the result of enrichment analysis.
show-method | Class "gseaResult" This class represents the result of GSEA analysis
summary | summary method
summary-method | Class "compareClusterResult" This class represents the comparison result of gene clusters by GO categories at specific level or GO enrichment analysis.
summary-method | Class "enrichResult" This class represents the result of enrichment analysis.
summary-method | Class "gseaResult" This class represents the result of GSEA analysis