mizer-package	mizer-package
addSpecies	addSpecies
age_mat	age_mat
age_mat_vB	age_mat_vB
animateSpectra	animateSpectra
balance_resource_logistic	resource_logistic
balance_resource_semichemostat	resource_semichemostat
BevertonHoltRDD	BevertonHoltRDD
box_pred_kernel	box_pred_kernel
calculated_species_params	species_params
calc_selectivity	calc_selectivity
calibrateBiomass	calibrateBiomass
calibrateNumber	calibrateNumber
calibrateYield	calibrateYield
catchability	setFishing
catchability<-	setFishing
compareParams	compareParams
completeSpeciesParams	completeSpeciesParams
constantEggRDI	constantEggRDI
constantRDD	constantRDD
constant_other	constant_other
customFunction	customFunction
defaults_edition	defaults_edition
default_pred_kernel_params	default_pred_kernel_params
different	different
distanceMaxRelRDI	distanceMaxRelRDI
distanceSSLogN	distanceSSLogN
double_sigmoid_length	double_sigmoid_length
dw	w
dw_full	w
emptyParams	emptyParams
ext_encounter	setExtEncounter
ext_encounter<-	setExtEncounter
ext_mort	setExtMort
ext_mort<-	setExtMort
finalN	finalN
finalNOther	finalNOther
finalNResource	finalN
gear_params	gear_params
gear_params<-	gear_params
getBiomass	getBiomass
getCatchability	setFishing
getColours	setColours
getCommunitySlope	getCommunitySlope
getComponent	getComponent
getCriticalFeedingLevel	getCriticalFeedingLevel
getDiet	getDiet
getEffort	getEffort
getEGrowth	getEGrowth
getEncounter	getEncounter
getERepro	getERepro
getEReproAndGrowth	getEReproAndGrowth
getESpawning	getESpawning
getExtEncounter	setExtEncounter
getExtMort	setExtMort
getFeedingLevel	getFeedingLevel
getFMort	getFMort
getFMortGear	getFMortGear
getGrowthCurves	getGrowthCurves
getInitialEffort	setFishing
getInteraction	getInteraction
getLinetypes	setColours
getM2	getM2
getM2Background	getM2Background
getMaturityProportion	setReproduction
getMaxIntakeRate	setMaxIntakeRate
getMeanMaxWeight	getMeanMaxWeight
getMeanWeight	getMeanWeight
getMetabolicRate	setMetabolicRate
getMetadata	setMetadata
getMort	getMort
getN	getN
getParams	getParams
getPhiPrey	getPhiPrey
getPredKernel	setPredKernel
getPredMort	getPredMort
getPredRate	getPredRate
getProportionOfLargeFish	getProportionOfLargeFish
getRateFunction	setRateFunction
getRates	getRates
getRDD	getRDD
getRDI	getRDI
getReproductionLevel	getReproductionLevel
getReproductionProportion	setReproduction
getResourceCapacity	getResourceDynamics
getResourceDynamics	getResourceDynamics
getResourceLevel	getResourceDynamics
getResourceMort	getResourceMort
getResourceRate	getResourceDynamics
getSearchVolume	setSearchVolume
getSelectivity	setFishing
getSSB	getSSB
getTimes	getTimes
getYield	getYield
getYieldGear	getYieldGear
getZ	getZ
get_f0_default	get_f0_default
get_gamma_default	get_gamma_default
get_h_default	get_h_default
get_initial_n	get_initial_n
get_ks_default	get_ks_default
get_phi	get_phi
get_required_reproduction	get_required_reproduction
get_size_range_array	get_size_range_array
get_time_elements	get_time_elements
given_species_params	species_params
given_species_params<-	species_params
idxFinalT	finalN
indicator_functions	indicator_functions
initialN	initialN-set
initialN<-	initialN-set
initialNOther	initialNOther-set
initialNOther<-	initialNOther-set
initialNResource	initialNResource-set
initialNResource<-	initialNResource-set
initial_effort	initial_effort
initial_effort<-	initial_effort
intake_max	setMaxIntakeRate
intake_max<-	setMaxIntakeRate
inter	inter
interaction_matrix	setInteraction
interaction_matrix<-	setInteraction
knife_edge	knife_edge
l2w	l2w
lognormal_pred_kernel	lognormal_pred_kernel
log_breaks	log_breaks
matchBiomasses	matchBiomasses
matchGrowth	matchGrowth
matchNumbers	matchNumbers
matchYields	matchYields
maturity	setReproduction
maturity<-	setReproduction
melt	reexports
metab	setMetabolicRate
metab<-	setMetabolicRate
mizer	mizer-package
mizerEGrowth	mizerEGrowth
mizerEncounter	mizerEncounter
mizerERepro	mizerERepro
mizerEReproAndGrowth	mizerEReproAndGrowth
mizerFeedingLevel	mizerFeedingLevel
mizerFMort	mizerFMort
mizerFMortGear	mizerFMortGear
mizerMort	mizerMort
MizerParams	MizerParams
MizerParams-class	MizerParams-class
mizerPredMort	mizerPredMort
mizerPredRate	mizerPredRate
mizerRates	mizerRates
mizerRDI	mizerRDI
mizerResourceMort	mizerResourceMort
MizerSim	MizerSim
MizerSim-class	MizerSim-class
N	N
needs_upgrading	needs_upgrading
newCommunityParams	newCommunityParams
newMultispeciesParams	newMultispeciesParams
newSingleSpeciesParams	newSingleSpeciesParams
newTraitParams	newTraitParams
noRDD	noRDD
NOther	NOther
NResource	N
NS_interaction	NS_interaction
NS_params	NS_params
NS_sim	NS_sim
NS_species_params	NS_species_params
NS_species_params_gears	NS_species_params_gears
other_params	setRateFunction
other_params<-	setRateFunction
plot,MizerParams,missing-method	plot-MizerParams-missing-method
plot,MizerSim,missing-method	plotMizerSim
plotBiomass	plotBiomass
plotBiomassObservedVsModel	plotBiomassObservedVsModel
plotDataFrame	plotDataFrame
plotDiet	plotDiet
plotFeedingLevel	plotFeedingLevel
plotFMort	plotFMort
plotGrowthCurves	plotGrowthCurves
plotlyBiomass	plotBiomass
plotlyBiomassObservedVsModel	plotBiomassObservedVsModel
plotlyFeedingLevel	plotFeedingLevel
plotlyFMort	plotFMort
plotlyGrowthCurves	plotGrowthCurves
plotlyPredMort	plotPredMort
plotlySpectra	plotSpectra
plotlyYield	plotYield
plotlyYieldGear	plotYieldGear
plotlyYieldObservedVsModel	plotYieldObservedVsModel
plotM2	plotM2
plotPredMort	plotPredMort
plotSpectra	plotSpectra
plotting_functions	plotting_functions
plotYield	plotYield
plotYieldGear	plotYieldGear
plotYieldObservedVsModel	plotYieldObservedVsModel
power_law_pred_kernel	power_law_pred_kernel
pred_kernel	setPredKernel
pred_kernel<-	setPredKernel
project	project
projectToSteady	projectToSteady
project_simple	project_simple
readParams	saveParams
reexports	reexports
removeComponent	setComponent
removeSpecies	removeSpecies
renameGear	renameGear
renameSpecies	renameSpecies
repro_prop	setReproduction
repro_prop<-	setReproduction
resource_capacity	setResource
resource_capacity<-	setResource
resource_constant	resource_constant
resource_dynamics	setResource
resource_dynamics<-	setResource
resource_level	setResource
resource_level<-	setResource
resource_logistic	resource_logistic
resource_params	resource_params
resource_params<-	resource_params
resource_rate	setResource
resource_rate<-	setResource
resource_semichemostat	resource_semichemostat
RickerRDD	RickerRDD
saveParams	saveParams
scaleModel	scaleModel
search_vol	setSearchVolume
search_vol<-	setSearchVolume
selectivity	setFishing
selectivity<-	setFishing
setBevertonHolt	setBevertonHolt
setColours	setColours
setComponent	setComponent
setExtEncounter	setExtEncounter
setExtMort	setExtMort
setFishing	setFishing
setInitialValues	setInitialValues
setInteraction	setInteraction
setLinetypes	setColours
setMaxIntakeRate	setMaxIntakeRate
setMetabolicRate	setMetabolicRate
setMetadata	setMetadata
setParams	setParams
setPredKernel	setPredKernel
setRateFunction	setRateFunction
setReproduction	setReproduction
setResource	setResource
setRmax	setRmax
setSearchVolume	setSearchVolume
set_community_model	set_community_model
set_multispecies_model	set_multispecies_model
set_species_param_default	set_species_param_default
set_trait_model	set_trait_model
SheperdRDD	SheperdRDD
sigmoid_length	sigmoid_length
sigmoid_weight	sigmoid_weight
species_params	species_params
species_params<-	species_params
steady	steady
steadySingleSpecies	steadySingleSpecies
summary,MizerParams-method	summary-MizerParams-method
summary,MizerSim-method	summary-MizerSim-method
summary_functions	summary_functions
truncated_lognormal_pred_kernel	truncated_lognormal_pred_kernel
upgradeParams	upgradeParams
upgradeSim	upgradeSim
validEffortVector	initial_effort
validGearParams	validGearParams
validGivenSpeciesParams	validSpeciesParams
validParams	validParams
validSim	validSim
validSpeciesParams	validSpeciesParams
valid_gears_arg	valid_gears_arg
valid_species_arg	valid_species_arg
w	w
w2l	l2w
w_full	w
